NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307960_1172449

Scaffold Ga0307960_1172449


Overview

Basic Information
Taxon OID3300031397 Open in IMG/M
Scaffold IDGa0307960_1172449 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #542
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)555
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028664Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0307960_11724491F028664N/ADMTKQILIGGSALRKLGSDRYTDDTDYLVSDLKSKESFIHDSENNIDFLNANGNNFFNEIYKIEEGNEIATAQSLFELKAYAFVQHCQNFNFKKADTCEYDMKFLVREFGIKGSTIVKKYITSGEYSEVEKVINSVKF

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